Skip to main content

What shapes the peer review landscape in ecology?



It was great to be discussing the future of peer review with researchers at the recent peer review panel discussion organised by the British Ecological Society (BES) at their annual conference in Liverpool last week.
Jane Hill (Professor of Ecology at the University of York and Chair of BES Publications Committee) chaired the debate, and we heard from Allen Moore (Editor-in-Chief, Ecology and Evolution), Patricia Morse (Managing Editor, American Naturalist), Nate Sanders (Senior Editor, Journal of Animal Ecology), Andy Robertson (Senior Vice President & Managing Director, Society Services, Wiley) and me.
We started with a discussion of ways in which the publishing process could be opened up, with Allen advocating open science principles and pre-registration of research. Nate also shared his experience in the value of “opening up” research online to get people talking and to generate new ideas. Andy Robertson suggested that partnering with services such as Overleaf allows publishers to facilitate such online collaboration. He acknowledged that publishing was becoming an interactive continuum from pre- to post-publication commenting.
However, pre-registration as a concept didn’t meet with overwhelming support. People worried that it would actually hinder science, creating a lack of agility to do research and just add yet more hurdles to the process. There was also a fear that research would be compromised or scooped. While sympathetic to the increased workload involved in pre-registration, Allen argued that the pros outweigh the cons: others can’t claim credit if the idea was publically registered, it saves wasted effort repeating experiments and can be beneficial for policy. Possibly biologists have more to learn from our counterparts in clinical research in this respect? Patricia pointed out that pre-registration is also incompatible with double-blind peer review in a journal.
The benefits of sharing and peer reviewing data were also acknowledged with Nate sharing examples of where the sharing of data and code allowed a reviewer to delve deeper than the authors to help improve the manuscript. Under open peer review (where authors see the names of the reviewers and if the article is published the reading public see reviewer names and comments too) such tremendous efforts by peer reviewers could be openly acknowledged and cited. Certainly, Daniel Shanahan has advocated in favour of the living article where the benefits of transparency in sharing what you are going to do (pre-registration), how you did it (the data) with accompanying narrative and peer review could radically reshape the future publishing landscape. Parallel conversations were also had at SpotOn London in November, videos available here.
We also discussed how to increase the pool of available peer reviewers given the increase in manuscript submissions. Tim Vines recently looked at whether it’s becoming harder to secure peer reviewer for peer review. His findings published in Research Integrity and Peer Review from his experience at Molecular Ecology (including a re-analysis of available peer review data from five other ecology journals) suggest that while reviewer agreement rates have declined, the situation is not as dire as some make out. But it’s certainly the case that personal connections, recommendations and conferences can all facilitate finding (and encouraging!) early career researchers who are willing to undertake peer review. There was a suggestion from an early career researcher that the process is in fact a ‘two way street’ you don’t have to wait for an Editor to ask if you’d like to volunteer to do peer review. Peer J and Elsevier also actively facilitate volunteering (see Peer J reviewer match and Elsevier’s call for volunteers). The role of mentoring to build confidence in undertaking peer review was acknowledged, and some publishers are experimenting with this (e.g. Wiley’s Journal of Morphology) as well as providing tips and advice on undertaking peer review. For example, BioMed Central has a resource here.
There was no shortage of questions on the themes above and time was soon up. I felt we’d perhaps not given much time to other ways in which the efficiency of peer review could be improved, especially in a community supporting innovative ideas such as Janne Seppanen’s Peerage of Science and Tim Vines’ Axios Review. It would have been useful to hear about the audience’s willingness to engage with these initiatives and hear if they are helping?
In summary, the peer review process is naturally co-dependent on the publishing process, but certainly there is a role for increased transparency (and choice?), better technology and data-driven experimentation into what helps and what hinders peer review. The storify of the event is here and a blog from Alice Plane of the British Ecological Society is here.
Thank you to Alice Plane and the British Ecological Society for hosting a thought-provoking event.

https://natureecoevocommunity.nature.com   

Elizabeth Moylan

Comments

Top 10 post

Reproduction of Deuteromycetes

    F ungi that reproduce asexually (anamorphic fungi ) are either yeasts or Deu-teromycetes. The term "yeast" is descriptive and stands for any fungus that reproduces by budding. Deuteromycetes (Fungi imperfecti, colloquially: molds) is an artificial as-semblage of fungi that reproduce asexually by conidia (conidiospores), either as the only form for propagation (imperfect fungi) or additionally (anamorph) to a sexual reproduction (teleomorph). When both the anamorph and the teleo-morph are known, the fungus is called a holomorph (the whole fungus). The teleomorph may have one (mono-anamorphic) or many (pleo-anamorphic) asexual stages. In other words: Deuteromycetes are the conidia-producing forms of a fungus and may or may not be associated with a teleomorph. Many Deuteromycetes are supposed to have a teleomorph in the Ascomycetes, but they may also have basidiomycetous affinity. Also in the wood-inhabiting Deuteromycetes, the teleomorph often is of ascomycetous a...

Islands

      H ow often have you seen those wonderful advertisements inviting you to have a holiday on a tropical island ( Fig. )What is it about islands, whether in the tropics or polar regions, that suggests romance, excitement and adventure? Is it because of a sense of escape from the pressures and stress of a bustling way of life, or the opportunity to savour sun-soaked beaches, or the adventure of rocky unexplored shores, or perhaps the chance of seeing unique island wildlife? It is for all these reasons that there is a growing tourist industry for many islands around the world. The wildlife of islands, especially oceanic islands , has long been of special significance in biology , ecology , conservation and biogeography. Studies of island species have also been of historical significance for evolutionary biology. Many of the world's islands have high levels of endemic flora and fauna; that is, taxa found only on a particular island and no other place.  Isla...

Red Streaking

Red Streaking Red-streaking discoloration (known as "Rotstreifigkeit" in Germany) is one of the most common and important damage in seasoning logs and sawn lumber, occurring only in conifers (spruce, pine, fir) and recognized as a distinct con-dition in continental Europe.  The stripe-shaped to spotted yellow to reddish-brown discoloration extends in logs from both their bark-covered faces and from their cut ends (Butin 1995; Baum and Bariska 2002) . Stems that are not debarked show a rather flat discoloration and debarked stems exhibit a streakier staining (v. Pechmann et al. 1967). Causal agents are several white-rot Basidiomycetes, in spruce particularly Stereum sanguinolentum (Kleist and Seehann 1997) and Amylostereum areola-turn. In south Germany, Amylostereum chailettii is common (Zycha and Knopf 1963; v. Pechmann et al. 1967).  In pine, red streaking is mainly due to Trichap-turn abietinum (Butin 1995). According to Kreisel (1961), S. sanguinolentum and T...

Ecosia ; Ecology Search

https://www.ecosia.org/ How it works You search the web with Ecosia.   Ads Search ads generate income for Ecosia.   Ecosia uses this income to plant trees. httpecologicaljournal.blogspot.com Ecosia about video

Bioenergetics

T housands of chemical reactions occur throughout the body during each minute of the day. Collec-tively, these reactions are called metabolism. Metab-olism includes chemical pathways that result in the synthesis of molecules (anabolic reactions) as well as the breakdown of molecules (catabolic reactions). Since energy is required by all cells, it is not sur-prising that cells possess chemical pathways that are capable of converting foodstuffs (i.e., fats, proteins, carbohydrates) into a biologically usable form of energy .  This metabolic process is termed bioenergetics. In order for you to run, jump, or swim, skeletal muscle cells must be able to continuously extract energy from food nutrients. In fact, the inability to transform energy contained in foodstuffs into usable biological energy would limit performance in endurance activities. The explanation for this is simple. To continue to contract, muscle cells must have a continuous source of energy. When energy is not...

White Rot

W hite-rot research has been reviewed by Ericksson et al. (1990) and Mess-ner et al. (2003). White rot means the degradation of cellulose, hemicellu-loses, and lignin usually by Basidiomycetes and rarely by Ascomycetes, e.g., Kretzschmaria deusta and Xylaria hypoxylon.  White rot has been classified by macroscopic characteristics into white-pocket, white-mottled, and white-stringy, the different types being affected by the fungal species, wood species, and ecological conditions. From microscopic and ultrastructural investiga-tions, two main types of white rot have been distinguished (Liese 1970).  In the simultaneous white rot ("corrosion rot"), carbohydrates and lignin are almost uniformly degraded at the same time and at a similar rate during all decay stages. Typical fungi with simultaneous white rot are Fomes fomentar-ws, Phellinus igniarius, Phellinus robustus, and Trametes versicolor in standing trees and stored hardwoods (Blanchette 1984a).  Wood d...

Soft Rot

The term " soft rot " was originally used by Findlay and Savory (1954) to describe a specific type of wood decay caused by Ascomycetes and Deuteromycetes which typically produce chains of cavities within the S2 layer of soft- and hardwoods in terrestrial and aquatic environments (Liese 1955), for example when the wood-fill  in cooling towers became destroyed despite water saturation, and when poles broke, although they were protected against Basidiomvcetes.  About 300 species (Seehann et al. 1975) to some 1,600 examples of ascomvcete and deuteromvcete fungi (Eaton and Hale 1993) cause soft rot, e.g., Chaeromium globosurn (Takahashi 1978), Hurnicola spp., Lecythophora hoffrnannii, Monodictys putredinis, Paecilornyces spp., and Thielavia terrestris. Soft-rot fungi differ from brown-rot and white-rot Basidiomycetes by grow-ing mainly inside the woody cell wall trate, starting from the tracheidal lumina., by means of thin perforation hyphae of less than 0.5 pm thickne...

Antagonists, Synergists, and Succession

                Interactions (reciprocal effects) between wood fungi have been early investi-gated e.g., by Oppermann (1951) and Leslie et al. (1976), and were described in detail by Rayner and Boddy (1988). Antagonism (competitive reciprocal effect), the mutual inhibition and in a broader sense the inhibition of one organism by others, is based on the pro-duction of toxic metabolites, on mycoparasitism, and on nutrient competition.  Antagonisms are investigated as alternative to the chemical protection against tree fungi ("biological forest protection") and against fungi on wood in service ("biological wood protection") (Walchli 1982; Bruce 1992; Holdenrieder and Greig 1998; Phillips-Laing et al. 2003). As early as 1934, Weindling showed the inhibiting effect of Trichoderma species on several fungi. Bjerkandera adusta and Ganoderma species were antagonistic against the causing agent of Plane canker stain disease (Grosclaude et al...

Sexual Reproduction

A specific feature of the sexual reproduction of Ascomycetes and Basid-iomycetes is that plasmogamy of haploid cells and karyogamy of two nuclei (n) to form a diploid nucleus (2n) are separated from each other temporally as well spatially by the dikaryophase (two-nuclei phase, dikaryon, n + n, ===) (Fig.1). A dikaryotic hypha is one with two nuclei that derive from two haploid hyphae, but in which the nuclei are not yet fused by karyogamy. Particularly in Basidiomycetes, the dikaryotic phase is considerably ex-tended. By conjugated division of the two nuclei (conjugated mitosis), by division of the dikaryotic hypha, and by means of a special nucleus migration connested with camp formation both daughter cells become again dikaryotic.  Ascomycetes  The life cycle of a typical ascomycete is shown in Fig.1 (also Muller and Loeffler 1992; Eaton and Hale 1993; Schwantes 1996; Jennings and Lysek 1999). Haploid (n) spores (A, ascospores or conidia from an anamorph) ge...